Liking cljdoc? Tell your friends :D

clj-biosequence.interproscan


->interproscanEntryclj

(->interproscanEntry src)

Positional factory function for class clj_biosequence.interproscan.interproscanEntry.

Positional factory function for class clj_biosequence.interproscan.interproscanEntry.
sourceraw docstring

->interproscanGoTermclj

(->interproscanGoTerm src)

Positional factory function for class clj_biosequence.interproscan.interproscanGoTerm.

Positional factory function for class clj_biosequence.interproscan.interproscanGoTerm.
sourceraw docstring

->interproscanHmmThreeclj

(->interproscanHmmThree src)

Positional factory function for class clj_biosequence.interproscan.interproscanHmmThree.

Positional factory function for class clj_biosequence.interproscan.interproscanHmmThree.
sourceraw docstring

->interproscanIntervalclj

(->interproscanInterval src)

Positional factory function for class clj_biosequence.interproscan.interproscanInterval.

Positional factory function for class clj_biosequence.interproscan.interproscanInterval.
sourceraw docstring

->interproscanPantherclj

(->interproscanPanther src)

Positional factory function for class clj_biosequence.interproscan.interproscanPanther.

Positional factory function for class clj_biosequence.interproscan.interproscanPanther.
sourceraw docstring

->interproscanPathwayclj

(->interproscanPathway src)

Positional factory function for class clj_biosequence.interproscan.interproscanPathway.

Positional factory function for class clj_biosequence.interproscan.interproscanPathway.
sourceraw docstring

->interproscanProfileclj

(->interproscanProfile src)

Positional factory function for class clj_biosequence.interproscan.interproscanProfile.

Positional factory function for class clj_biosequence.interproscan.interproscanProfile.
sourceraw docstring

->interproscanProteinclj

(->interproscanProtein accession src)

Positional factory function for class clj_biosequence.interproscan.interproscanProtein.

Positional factory function for class clj_biosequence.interproscan.interproscanProtein.
sourceraw docstring

->interproscanReaderclj

(->interproscanReader strm)

Positional factory function for class clj_biosequence.interproscan.interproscanReader.

Positional factory function for class clj_biosequence.interproscan.interproscanReader.
sourceraw docstring

->interproscanResultclj

(->interproscanResult file)

Positional factory function for class clj_biosequence.interproscan.interproscanResult.

Positional factory function for class clj_biosequence.interproscan.interproscanResult.
sourceraw docstring

->interproscanSignatureclj

(->interproscanSignature src)

Positional factory function for class clj_biosequence.interproscan.interproscanSignature.

Positional factory function for class clj_biosequence.interproscan.interproscanSignature.
sourceraw docstring

->interproscanSuperFamilyclj

(->interproscanSuperFamily src)

Positional factory function for class clj_biosequence.interproscan.interproscanSuperFamily.

Positional factory function for class clj_biosequence.interproscan.interproscanSuperFamily.
sourceraw docstring

->interproscanTmhmmclj

(->interproscanTmhmm src)

Positional factory function for class clj_biosequence.interproscan.interproscanTmhmm.

Positional factory function for class clj_biosequence.interproscan.interproscanTmhmm.
sourceraw docstring

get-gosclj

(get-gos ips)
source

hmmer-3-seqclj

(hmmer-3-seq protein)
source

init-indexed-ipsclj

source

init-ips-resultclj

(init-ips-result file)
source

interval-evalueclj

(interval-evalue int)
source

interval-scoreclj

(interval-score int)
source

ipsclj

(ips bsl
     outfile
     &
     {:keys [appl lookup goterms precalc pathways]
      :or {appl (quote ("tigrfam"))
           lookup true
           goterms true
           precalc false
           pathways false}})

Runs interproscan on a list of biosequences. Specify analyses using the :appl keyword, default is "tigrfam" only. To run all analyses set :appl to nil.

Runs interproscan on a list of biosequences. Specify analyses using
the :appl keyword, default is "tigrfam" only. To run all analyses
set :appl to nil.
sourceraw docstring

ipsEntrycljprotocol

entry-nameclj

(entry-name this)

entry-typeclj

(entry-type this)

ips-go-termsclj

(ips-go-terms this)

pathwaysclj

(pathways this)
source

ipsGotermcljprotocol

bp?clj

(bp? this)

categoryclj

(category this)

cc?clj

(cc? this)

go-nameclj

(go-name this)

go-stringclj

(go-string this)

mp?clj

(mp? this)
source

ipsMatchcljprotocol

evalueclj

(evalue this)

scoreclj

(score this)

signatureclj

(signature this)
source

ipsPathwaycljprotocol

pathway-databaseclj

(pathway-database this)

pathway-nameclj

(pathway-name this)
source

ipsSignaturecljprotocol

entryclj

(entry this)

Returns the IPR entry from a signature.

Returns the IPR entry from a signature.

libraryclj

(library this)

Returns a hashmap with the keys :library and :version

Returns a hashmap with the keys :library and :version
source

map->interproscanEntryclj

(map->interproscanEntry m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanEntry, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanEntry, taking a map of keywords to field values.
sourceraw docstring

map->interproscanGoTermclj

(map->interproscanGoTerm m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanGoTerm, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanGoTerm, taking a map of keywords to field values.
sourceraw docstring

map->interproscanHmmThreeclj

(map->interproscanHmmThree m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanHmmThree, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanHmmThree, taking a map of keywords to field values.
sourceraw docstring

map->interproscanIntervalclj

(map->interproscanInterval m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanInterval, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanInterval, taking a map of keywords to field values.
sourceraw docstring

map->interproscanPantherclj

(map->interproscanPanther m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanPanther, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanPanther, taking a map of keywords to field values.
sourceraw docstring

map->interproscanPathwayclj

(map->interproscanPathway m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanPathway, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanPathway, taking a map of keywords to field values.
sourceraw docstring

map->interproscanProfileclj

(map->interproscanProfile m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanProfile, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanProfile, taking a map of keywords to field values.
sourceraw docstring

map->interproscanProteinclj

(map->interproscanProtein m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanProtein, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanProtein, taking a map of keywords to field values.
sourceraw docstring

map->interproscanReaderclj

(map->interproscanReader m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanReader, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanReader, taking a map of keywords to field values.
sourceraw docstring

map->interproscanResultclj

(map->interproscanResult m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanResult, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanResult, taking a map of keywords to field values.
sourceraw docstring

map->interproscanSignatureclj

(map->interproscanSignature m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanSignature, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanSignature, taking a map of keywords to field values.
sourceraw docstring

map->interproscanSuperFamilyclj

(map->interproscanSuperFamily m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanSuperFamily, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanSuperFamily, taking a map of keywords to field values.
sourceraw docstring

map->interproscanTmhmmclj

(map->interproscanTmhmm m__7585__auto__)

Factory function for class clj_biosequence.interproscan.interproscanTmhmm, taking a map of keywords to field values.

Factory function for class clj_biosequence.interproscan.interproscanTmhmm, taking a map of keywords to field values.
sourceraw docstring

msignatureclj

(msignature this)
source

panther-seqclj

(panther-seq protein)
source

profile-seqclj

(profile-seq protein)
source

superfamily-seqclj

(superfamily-seq protein)
source

tmhmm-seqclj

(tmhmm-seq protein)
source

cljdoc is a website building & hosting documentation for Clojure/Script libraries

× close