(->interproscanEntry src)
Positional factory function for class clj_biosequence.interproscan.interproscanEntry.
Positional factory function for class clj_biosequence.interproscan.interproscanEntry.
(->interproscanGoTerm src)
Positional factory function for class clj_biosequence.interproscan.interproscanGoTerm.
Positional factory function for class clj_biosequence.interproscan.interproscanGoTerm.
(->interproscanHmmThree src)
Positional factory function for class clj_biosequence.interproscan.interproscanHmmThree.
Positional factory function for class clj_biosequence.interproscan.interproscanHmmThree.
(->interproscanInterval src)
Positional factory function for class clj_biosequence.interproscan.interproscanInterval.
Positional factory function for class clj_biosequence.interproscan.interproscanInterval.
(->interproscanPanther src)
Positional factory function for class clj_biosequence.interproscan.interproscanPanther.
Positional factory function for class clj_biosequence.interproscan.interproscanPanther.
(->interproscanPathway src)
Positional factory function for class clj_biosequence.interproscan.interproscanPathway.
Positional factory function for class clj_biosequence.interproscan.interproscanPathway.
(->interproscanProfile src)
Positional factory function for class clj_biosequence.interproscan.interproscanProfile.
Positional factory function for class clj_biosequence.interproscan.interproscanProfile.
(->interproscanProtein accession src)
Positional factory function for class clj_biosequence.interproscan.interproscanProtein.
Positional factory function for class clj_biosequence.interproscan.interproscanProtein.
(->interproscanReader strm)
Positional factory function for class clj_biosequence.interproscan.interproscanReader.
Positional factory function for class clj_biosequence.interproscan.interproscanReader.
(->interproscanResult file)
Positional factory function for class clj_biosequence.interproscan.interproscanResult.
Positional factory function for class clj_biosequence.interproscan.interproscanResult.
(->interproscanSignature src)
Positional factory function for class clj_biosequence.interproscan.interproscanSignature.
Positional factory function for class clj_biosequence.interproscan.interproscanSignature.
(->interproscanSuperFamily src)
Positional factory function for class clj_biosequence.interproscan.interproscanSuperFamily.
Positional factory function for class clj_biosequence.interproscan.interproscanSuperFamily.
(->interproscanTmhmm src)
Positional factory function for class clj_biosequence.interproscan.interproscanTmhmm.
Positional factory function for class clj_biosequence.interproscan.interproscanTmhmm.
(ips bsl
outfile
&
{:keys [appl lookup goterms precalc pathways]
:or {appl (quote ("tigrfam"))
lookup true
goterms true
precalc false
pathways false}})
Runs interproscan on a list of biosequences. Specify analyses using the :appl keyword, default is "tigrfam" only. To run all analyses set :appl to nil.
Runs interproscan on a list of biosequences. Specify analyses using the :appl keyword, default is "tigrfam" only. To run all analyses set :appl to nil.
(entry-name this)
(entry-type this)
(ips-go-terms this)
(pathways this)
(bp? this)
(category this)
(cc? this)
(go-name this)
(go-string this)
(mp? this)
(pathway-database this)
(pathway-name this)
(entry this)
Returns the IPR entry from a signature.
Returns the IPR entry from a signature.
(library this)
Returns a hashmap with the keys :library and :version
Returns a hashmap with the keys :library and :version
(map->interproscanEntry m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanEntry, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanEntry, taking a map of keywords to field values.
(map->interproscanGoTerm m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanGoTerm, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanGoTerm, taking a map of keywords to field values.
(map->interproscanHmmThree m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanHmmThree, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanHmmThree, taking a map of keywords to field values.
(map->interproscanInterval m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanInterval, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanInterval, taking a map of keywords to field values.
(map->interproscanPanther m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanPanther, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanPanther, taking a map of keywords to field values.
(map->interproscanPathway m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanPathway, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanPathway, taking a map of keywords to field values.
(map->interproscanProfile m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanProfile, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanProfile, taking a map of keywords to field values.
(map->interproscanProtein m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanProtein, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanProtein, taking a map of keywords to field values.
(map->interproscanReader m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanReader, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanReader, taking a map of keywords to field values.
(map->interproscanResult m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanResult, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanResult, taking a map of keywords to field values.
(map->interproscanSignature m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanSignature, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanSignature, taking a map of keywords to field values.
(map->interproscanSuperFamily m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanSuperFamily, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanSuperFamily, taking a map of keywords to field values.
(map->interproscanTmhmm m__7585__auto__)
Factory function for class clj_biosequence.interproscan.interproscanTmhmm, taking a map of keywords to field values.
Factory function for class clj_biosequence.interproscan.interproscanTmhmm, taking a map of keywords to field values.
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