(read-piles reader)
Reads piled-up bases of the pileup file, returning them as a lazy sequence of cljam.io.pileup.LocusPile.
Reads piled-up bases of the pileup file, returning them as a lazy sequence of cljam.io.pileup.LocusPile.
(reader f)
Returns an open instance of cljam.io.pileup.PileupReader of f. Should be used inside with-open to ensure the reader is properly closed.
Returns an open instance of cljam.io.pileup.PileupReader of f. Should be used inside with-open to ensure the reader is properly closed.
(write-piles pileup-writer piles)
Writes piled-up bases to a file. pileup-writer
must be an instance of
cljam.io.pileup.PileupWriter.
Writes piled-up bases to a file. `pileup-writer` must be an instance of cljam.io.pileup.PileupWriter.
(writer f)
(writer f reference-path)
Returns an open instance of cljam.io.pileup.PileupWriter of f. Should be used
inside with-open to ensure the writer is properly closed. A reference sequence
is used when the second arg reference-path
is supplied.
Returns an open instance of cljam.io.pileup.PileupWriter of f. Should be used inside with-open to ensure the writer is properly closed. A reference sequence is used when the second arg `reference-path` is supplied.
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