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cljam.io.pileup


LocusPileclj

source

PileupBaseclj

source

read-pilesclj

(read-piles reader)

Reads piled-up bases of the pileup file, returning them as a lazy sequence of cljam.io.pileup.LocusPile.

Reads piled-up bases of the pileup file, returning them as a lazy sequence of
cljam.io.pileup.LocusPile.
sourceraw docstring

readerclj

(reader f)

Returns an open instance of cljam.io.pileup.PileupReader of f. Should be used inside with-open to ensure the reader is properly closed.

Returns an open instance of cljam.io.pileup.PileupReader of f. Should be used
inside with-open to ensure the reader is properly closed.
sourceraw docstring

write-pilesclj

(write-piles pileup-writer piles)

Writes piled-up bases to a file. pileup-writer must be an instance of cljam.io.pileup.PileupWriter.

Writes piled-up bases to a file. `pileup-writer` must be an instance of
cljam.io.pileup.PileupWriter.
sourceraw docstring

writerclj

(writer f)
(writer f reference-path)

Returns an open instance of cljam.io.pileup.PileupWriter of f. Should be used inside with-open to ensure the writer is properly closed. A reference sequence is used when the second arg reference-path is supplied.

Returns an open instance of cljam.io.pileup.PileupWriter of f. Should be used
inside with-open to ensure the writer is properly closed. A reference sequence
is used when the second arg `reference-path` is supplied.
sourceraw docstring

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