cljam.io.sam.util — cljam 0.8.0

Utilities related to SAM/BAM format.

compute-bin clj

(compute-bin aln)

Returns indexing bin based on alignment start and end.

get-end clj

(get-end aln)

Returns the end position in reference for the given alignment.

linear-index-depth clj

linear-index-shift clj

parse-alignment clj

(parse-alignment line)

Parse an alignment line, returning a map of the alignment.

stringify-alignment clj

(stringify-alignment a)