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cljam.io.sam.util.refs
Utility functions for SAM references.
Utility functions for SAM references.
make-refsclj
(make-refs hdr)Return a reference sequence from the sam header.
Return a reference sequence from the sam header.
ref-by-nameclj
(ref-by-name refs name)Returns the first reference which has the specified name.
Returns the first reference which has the specified name.
ref-idclj
Returns reference ID from the reference sequence and the specified reference name. If not found, returns nil.
Returns reference ID from the reference sequence and the specified reference name. If not found, returns nil.
ref-nameclj
(ref-name refs id)Returns a reference name from the reference ID. Returns nil if id is not mapped.
Returns a reference name from the reference ID. Returns nil if id is not mapped.
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