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cljam.algo.bam-indexer

Indexer of BAM.

Indexer of BAM.
raw docstring

cljam.algo.convert

Converters between equivalent formats: SAM/BAM and FASTA/TwoBit.

Converters between equivalent formats: SAM/BAM and FASTA/TwoBit.
raw docstring

cljam.algo.dedupe

Functions to remove duplications.

Functions to remove duplications.
raw docstring

cljam.algo.depth

Provides algorithms for calculating simple depth of coverage.

Provides algorithms for calculating simple depth of coverage.
raw docstring

cljam.algo.dict

Alpha - subject to change. Generator of a FASTA sequence dictionary file.

Alpha - subject to change.
Generator of a FASTA sequence dictionary file.
raw docstring

cljam.algo.fasta-indexer

Indexer of FASTA.

Indexer of FASTA.
raw docstring

cljam.algo.level

Level analyzer of alignments in BAM.

Level analyzer of alignments in BAM.
raw docstring

cljam.algo.normal

Functions to normalize the SAM/BAM format.

Functions to normalize the SAM/BAM format.
raw docstring

cljam.algo.sorter

Sorter of the SAM/BAM format alignments.

Sorter of the SAM/BAM format alignments.
raw docstring

cljam.algo.vcf-indexer

Indexer of VCF/BCF.

Indexer of VCF/BCF.
raw docstring

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