cljam.io.bam-index.core — cljam 0.8.3

The core of BAM index features.

bam-index clj

(bam-index f)

bin-index clj

(bin-index f ref-idx)

create-index clj

(create-index f alns refs)

Creates a BAM index file from the alignments and references data.

get-spans clj

(get-spans bai ref-idx beg end)

get-unplaced-spans clj

(get-unplaced-spans bai)

linear-index clj

(linear-index f ref-idx)

writer clj

(writer f refs)