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cljam.io.bigwig

Functions to read the bigWig format. See https://genome.ucsc.edu/goldenpath/help/bigWig.html and https://github.com/ucscGenomeBrowser/kent for the detail bigWig specifications.

Functions to read the bigWig format. See https://genome.ucsc.edu/goldenpath/help/bigWig.html
and https://github.com/ucscGenomeBrowser/kent for the detail bigWig
specifications.
raw docstring

BbiChromInfoclj

source

BigWigHeadersclj

source

BIGWIGReaderclj

source

BptHeaderclj

source

CirTreeclj

source

ExtendedHeaderclj

source

FixedWidthHeaderclj

source

read-tracksclj

(read-tracks rdr)

Reads a bigWig tracks from reader and returns a sequence of tracks representing Wig (fixedStep or variableStep) or BedGraph format.

Reads a bigWig tracks from reader and returns a sequence of tracks
representing Wig (fixedStep or variableStep) or BedGraph format.
sourceraw docstring

readerclj

(reader f)

Returns an open cljam.io.bigwig.BIGWIGReader of f. Should be used inside with-open to ensure the reader is properly closed.

Returns an open cljam.io.bigwig.BIGWIGReader of f. Should be used inside with-open
to ensure the reader is properly closed.
sourceraw docstring

TotalSummaryclj

source

ZoomHeaderclj

source

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