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cljam.io.gff


read-featuresclj

(read-features reader)

Reads features of the GFF file, returning them as a lazy sequence. reader must be an instance of cljam.io.gff.GFFReader.

Reads features of the GFF file, returning them as a lazy sequence. `reader`
must be an instance of `cljam.io.gff.GFFReader`.
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readerclj

(reader f)

Returns an open cljam.io.gff.GFFReader instance of f. Should be used inside with-open to ensure the reader is properly closed.

Returns an open `cljam.io.gff.GFFReader` instance of `f`. Should be used
inside `with-open` to ensure the reader is properly closed.
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versionclj

(version reader)

Returns a file format version of the given reader.

Returns a file format version of the given `reader`.
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write-featuresclj

(write-features writer features)

Writes features to the GFF file. writer must be an instance of cljam.io.gff.GFFWriter. features must be a sequence of feature maps.

Writes `features` to the GFF file. `writer` must be an instance of
`cljam.io.gff.GFFWriter`. `features` must be a sequence of feature maps.
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writerclj

(writer f)
(writer f options)

Returns an open cljam.io.gff.GFFWriter instance of f. Should be used inside with-open to ensure the writer is properly closed. Can take an optional argument options, a map containing :version, :major-revision, :minor-revision and :encoding. Currently supporting only :version 3. To compress outputs, set :encoding to :gzip or :bzip2.

Returns an open `cljam.io.gff.GFFWriter` instance of `f`. Should be used
inside `with-open` to ensure the writer is properly closed. Can take an
optional argument `options`, a map containing `:version`, `:major-revision`,
`:minor-revision` and `:encoding`. Currently supporting only `:version` 3.
To compress outputs, set `:encoding` to `:gzip` or `:bzip2`.
sourceraw docstring

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