cljam.util.intervals — cljam 0.8.3

Data structures for interval queries.

find-overlap-intervals clj

(find-overlap-intervals indexed-intervals chr start end)

Find intervals that are on the given chr and overlap the given interval [start end] using indexes created by index-intervals.

IIntervals clj protocol

find-overlap-intervals* clj

(find-overlap-intervals* this start end)

index-intervals clj

(index-intervals intervals)

(index-intervals intervals {:keys [structure] :or {structure :sorted-map}})

Make indexes for intervals to find overlaps.