Anglican Source Code Map

src/
  anglican/
    # Running inference and processing results
    core.clj       --- Running inference and auxiliary commands
    results.clj    --- Handling of inference results

    # Inference 
    ## General
    inference.clj  --- General inference functions
    state.clj      --- Particle state
    runtime.clj    --- Runtime support

    ## Algorithms

    ### Posterior Estimation
    importance.clj --- Importance sampling (likelihood weighting)
    [p]lmh.clj     --- [Parallel] Lightweight Metropolis-Hastings
    [p]almh.clj    --- [Parallel] Adaptive LMH
    rmh.clj        --- Reuse Lightweight Metropolis-Hastings
    smc.clj        --- Sequential Monte Carlo
    pimh.clj       --- Particle Independent Metropolis-Hastings
    pgibbs.clj     --- Particle Gibbs (Iterative Conditional SMC)
    pcascade.clj   --- Particle cascade (asynchronous sequential Monte Carlo)
    pgas.clj       --- Particle Gibbs with ancestor sampling
    ipmcmc.clj     --- Interacting particle MCMC
    bbvb.clj       --- Black box variational Bayes

    ### MAP Estimation
    siman.clj      --- Simulated annealing
    bamc.clj	   --- Bayesian ascent Monte Carlo

    ### Filtering
    pfilter.clj    --- Particle Filter

    # Code transformations
    xlat.clj       --- Anglican to Clojure
    trap.clj       --- Clojure to CPS
    emit.clj       --- Compiling CPS 

  anglib/
    # Anglican library modules
    ## In particular: 
    crp.clj        --- Wrapped CRP for compatibility with the
                       original Anglican syntax; crp-based DPmem
    iris_data.clj  --- Ronald Fisher\'s Iris dataset
    beaver.clj     --- Beaver activity datasets