bcbio.run.fsp — bcbio.run 0.0.6

File naming and manipulation commands that supplement the fs library (fsplus).

abspath clj

(abspath f)

Produce a normalized file path, expanding home directories.

add-file-part clj

(add-file-part fname part)

(add-file-part fname part out-dir)

(add-file-part fname part out-dir new-ext)

Add file extender: base.txt -> base-part.txt

file-root clj

(file-root fname)

(file-root fname out-dir)

Retrieve file name without extension: /path/to/fname.txt -> /path/to/fname

pog-reader clj

(pog-reader f)

Plain or gzip input reader.

remove-file-part clj

(remove-file-part fname part)

Remove file specialization extender: base-part.txt -> base.txt

remove-path clj

(remove-path x)

Remove file or directory only if it exists.

remove-zip-ext clj

(remove-zip-ext fname)

Remove any zip extensions from the input filename

safe-mkdir clj

(safe-mkdir d)

Make a directory, returning the created directory name.

split-ext+ clj

(split-ext+ f)

Split extension, grouping zipped extensions with rest of file