Changelog

0.4.1 - 2019-12-09

Changed

• Make order of start and end strict.

Fixed

• Fix ter substitution.
• Fix ter insertion.

0.4.0 - 2019-08-01

BREAKING

• HGVS data structure changes from map to record (clj-hgvs.core/HGVS).
• (n)cdna is renamed to (non-)coding-dna to avoid misunderstanding. See #2 for more information.
  • kind: :cdna, :ncdna → :coding-dna, :non-coding-dna
  • coordinate (clj-hgvs.coordinate):
    • CDNACoordinate, NCDNACoordinate → CodingDNACoordinate, NonCodingDNACoordinate
    • cdna-coordinate, ncdna-coordinate → coding-dna-coordinate, non-coding-dna-coordinate
    • parse-cdna-coordinate, parse-ncdna-coordinate → parse-coding-dna-coordinate, parse-non-coding-dna-coordinate

Added

• Add a tagged literal.
• Add custom print method.
• Support circular DNA. #1

Changed

• Change HGVS map to record.
• Rename (n)cdna to (non-)coding-dna. #2

0.3.1 - 2018-12-12

Added

• Add a macro to disable validation in a scope.
• Support parsing protein unknown alt "p.Met1?".

0.3.0 - 2018-11-15

BREAKING

• clj-hgvs 0.3.0 uses clojure.spec for HGVS validation. To use clj-hgvs with clojure 1.8, you must include a dependency on clojure-future-spec.
• A new ter codon site of protein frame shift is not displayed by default. Set :show-ter-site? option to true to display that.

Added

• Add show-ter-site? option for frame shift format.

Changed

• Use spec for validation.
• Refactor AA long-short conversion.

Removed

• Drop clojure 1.7 support.

Fixed

• Fix plain/restore fns of protein extension.

0.2.4 - 2018-10-02

0.2.3 - 2017-12-01

0.2.2 - 2017-08-29

0.2.1 - 2017-06-05

0.2.0 - 2017-05-18

0.1.3 - 2017-05-12

0.1.2 - 2017-05-08

0.1.1 - 2017-05-01

0.1.0 - 2017-04-17