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clj-hgvs.repairer

HGVS repair functions.

HGVS repair functions.

built-in-repairers

The built-in repair functions.

A repair fn must take a HGVS string and an inferred kind, and return a repaired HGVS string. e.g.

(defn lower-case-ext [s kind] (if (= kind :protein) (clojure.string/replace s #"EXT" "ext") s))

The built-in rules are based on frequent mistakes in popular public-domain databases such as dbSNP and ClinVar.

The built-in repair functions.

A repair fn must take a HGVS string and an inferred kind, and return a
repaired HGVS string. e.g.

  (defn lower-case-ext
    [s kind]
    (if (= kind :protein)
      (clojure.string/replace s #"EXT" "ext")
      s))

The built-in rules are based on frequent mistakes in popular public-domain
databases such as dbSNP and ClinVar.
sourceraw docstring

infer-kind

(infer-kind s)

Infers a kind from the provided string, returning the kind keyword.

Infers a kind from the provided string, returning the kind keyword.
sourceraw docstring

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