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clj-hgvs.coordinate
Data structures and functions to handle HGVS coordinates.
Data structures and functions to handle HGVS coordinates.
- ->region-keyword
- ->region-str
- Calculable
- circular-dna-coordinate
- CircularDNACoordinate
- coding-dna-coordinate
- CodingDNACoordinate
- comparable-coordinates?
- Coordinate
- genomic-coordinate
- GenomicCoordinate
- ICodingDNACoordinate
- mitochondrial-coordinate
- MitochondrialCoordinate
- non-coding-dna-coordinate
- NonCodingDNACoordinate
- parse-circular-dna-coordinate
- parse-coding-dna-coordinate
- parse-coordinate
- parse-genomic-coordinate
- parse-mitochondrial-coordinate
- parse-non-coding-dna-coordinate
- parse-protein-coordinate
- parse-rna-coordinate
- parse-uncertain-coordinate
- protein-coordinate
- ProteinCoordinate
- restore
- rna-coordinate
- RNACoordinate
- uncertain-coordinate
- UncertainCoordinate
- unknown-coordinate
- UnknownCoordinate
clj-hgvs.core
Main functions for handling HGVS. See http://varnomen.hgvs.org/ for the detail HGVS nomenclature.
Main functions for handling HGVS. See http://varnomen.hgvs.org/ for the detail HGVS nomenclature.
clj-hgvs.internal
Common functions used only inside this project.
Common functions used only inside this project.
clj-hgvs.mutation
Data structures and functions to handle HGVS mutations.
Data structures and functions to handle HGVS mutations.
- ->long-amino-acid
- ->short-amino-acid
- dna-alleles
- dna-conversion
- dna-deletion
- dna-duplication
- dna-indel
- dna-insertion
- dna-inversion
- dna-repeated-seqs
- dna-substitution
- DNAAlleles
- DNAConversion
- DNADeletion
- DNADuplication
- DNAIndel
- DNAInsertion
- DNAInversion
- DNARepeatedSeqs
- DNASubstitution
- equiv
- Equivalence
- long-amino-acids
- Mutation
- no-protein
- no-rna
- NoProtein
- NoRNA
- parse
- parse-dna
- parse-dna-alleles
- parse-dna-conversion
- parse-dna-deletion
- parse-dna-duplication
- parse-dna-indel
- parse-dna-insertion
- parse-dna-inversion
- parse-dna-repeated-seqs
- parse-dna-substitution
- parse-protein
- parse-protein-alleles
- parse-protein-deletion
- parse-protein-duplication
- parse-protein-extension
- parse-protein-frame-shift
- parse-protein-indel
- parse-protein-insertion
- parse-protein-repeated-seqs
- parse-protein-substitution
- parse-rna
- parse-rna-alleles
- parse-rna-conversion
- parse-rna-deletion
- parse-rna-duplication
- parse-rna-indel
- parse-rna-insertion
- parse-rna-inversion
- parse-rna-repeated-seqs
- parse-rna-substitution
- parse-uncertain-mutation
- protein-alleles
- protein-deletion
- protein-duplication
- protein-extension
- protein-frame-shift
- protein-indel
- protein-insertion
- protein-no-effect
- protein-repeated-seqs
- protein-substitution
- protein-unknown-mutation
- ProteinAlleles
- ProteinDeletion
- ProteinDuplication
- ProteinExtension
- ProteinFrameShift
- ProteinIndel
- ProteinInsertion
- ProteinNoEffect
- ProteinRepeatedSeqs
- ProteinSubstitution
- ProteinUnknownMutation
- restore
- rna-alleles
- rna-conversion
- rna-deletion
- rna-duplication
- rna-indel
- rna-insertion
- rna-inversion
- rna-no-effect
- rna-repeated-seqs
- rna-splice-affected
- rna-substitution
- rna-unknown-mutation
- RNAAlleles
- RNAConversion
- RNADeletion
- RNADuplication
- RNAIndel
- RNAInsertion
- RNAInversion
- RNANoEffect
- RNARepeatedSeqs
- RNASpliceAffected
- RNASubstitution
- RNAUnknownMutation
- SeparatelyFormat
- short-amino-acids
- uncertain-mutation
- UncertainMutation
clj-hgvs.repairer
HGVS repair functions.
HGVS repair functions.
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