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cljam.algo.pileup
Functions to calculate pileup from the BAM.
Functions to calculate pileup from the BAM.
create-mpileupclj
(create-mpileup in-bam out-mplp)Creates a mpileup file from the BAM file.
Creates a mpileup file from the BAM file.
mpileupclj
(mpileup bam-reader region)(mpileup ref-reader bam-reader region)Returns a lazy sequence of cljam.algo.pileup.mpileup.MPileupElement calculated from FASTA and BAM. If start and end are not supplied, piles whole range up.
Returns a lazy sequence of cljam.algo.pileup.mpileup.MPileupElement calculated from FASTA and BAM. If start and end are not supplied, piles whole range up.
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