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cljam.io.bam-index.writer
*alignments-partition-size*clj
The number of alignments that is loaded each indexing process. This has an effect on performance of concurrent indexing. The default value is 10,000.
The number of alignments that is loaded each indexing process. This has an effect on performance of concurrent indexing. The default value is 10,000.
make-index-from-blocksclj
(make-index-from-blocks nrefs blocks)Calculates a BAM index from provided references and alignment blocks. Optionally, you can do this process concurrently.
Calculates a BAM index from provided references and alignment blocks. Optionally, you can do this process concurrently.
write-index!clj
(write-index! wtr alns)Calculates a BAM index from alns, writing the index to a file.
Calculates a BAM index from alns, writing the index to a file.
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