(clone-reader rdr)
Clones .2bit reader sharing persistent objects.
Clones .2bit reader sharing persistent objects.
(mask! cb masks start end)
Mask regions of given charbuffer.
Mask regions of given charbuffer.
(read-all-sequences rdr)
(read-all-sequences rdr option)
Reads all sequences in file.
Reads all sequences in file.
(read-indices rdr)
Reads metadata of indexed sequences. Forces loading all indices.
Reads metadata of indexed sequences. Forces loading all indices.
(read-seq-summaries rdr)
Reads summaries of sequences in this 2bit file.
Reads summaries of sequences in this 2bit file.
(read-sequence rdr region)
(read-sequence rdr {:keys [chr start end]} {:keys [mask?] :or {mask? false}})
Reads sequence at the given region from reader. Pass {:mask? true} to enable masking of sequence.
Reads sequence at the given region from reader. Pass {:mask? true} to enable masking of sequence.
(replace-ambs! cb ambs start end)
Replace regions of charbuffer with Ns.
Replace regions of charbuffer with Ns.
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