Converters between equivalent formats: SAM/BAM and FASTA/TwoBit.
Converters between equivalent formats: SAM/BAM and FASTA/TwoBit.
Functions to remove duplications.
Functions to remove duplications.
Provides algorithms for calculating simple depth of coverage.
Provides algorithms for calculating simple depth of coverage.
Alpha - subject to change. Generator of a FASTA sequence dictionary file.
Alpha - subject to change. Generator of a FASTA sequence dictionary file.
Level analyzer of alignments in BAM.
Level analyzer of alignments in BAM.
Functions to normalize the SAM/BAM format.
Functions to normalize the SAM/BAM format.
Functions to calculate pileup from the BAM.
Functions to calculate pileup from the BAM.
Sorter of the SAM/BAM format alignments.
Sorter of the SAM/BAM format alignments.
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