com.eldrix.hermes.core — com.eldrix/hermes 0.8.353

Provides a terminology service, wrapping the SNOMED store and search implementations as a single unified service.

active-association-targets clj

(active-association-targets svc component-id refset-id)

Return the active association targets for a given component.

all-transitive-synonyms clj

(all-transitive-synonyms svc params)

are-any? clj

(are-any? svc concept-ids parent-ids)

Are any of the concept-ids subsumed by any of the parent-ids?

Checks the is-a relationships of the concepts in question against the set of parent identifiers.

build-search-index clj

(build-search-index root)

(build-search-index root language-priority-list)

close clj

(close svc)

compact clj

(compact root)

create-service clj

(create-service root import-from)

(create-service root import-from locale-preference-string)

Create a terminology service combining both store and search functionality in a single step. It would be unusual to use this; usually each step would be performed interactively by an end-user.

ecl-contains? clj

(ecl-contains? svc concept-ids ecl)

Do any of the concept-ids satisfy the constraint expression specified? This is an alternative to expanding the valueset and then checking membership.

expand-ecl clj

(expand-ecl svc ecl)

Expand an ECL expression.

expand-ecl-historic clj

(expand-ecl-historic svc ecl)

Expand an ECL expression and include historic associations of the results, so that the results will include now inactive/deprecated concept identifiers.

get-all-children clj

(get-all-children svc concept-id)

(get-all-children svc concept-id type-id)

get-all-parents clj

(get-all-parents svc concept-id)

(get-all-parents svc concept-id type-id)

get-child-relationships-of-type clj

(get-child-relationships-of-type svc concept-id type-concept-id)

Returns a collection of identifiers representing the child relationships of the specified type of the specified concept.

get-component-refset-items clj

(get-component-refset-items svc component-id)

(get-component-refset-items svc component-id refset-id)

get-concept clj

(get-concept svc concept-id)

get-descriptions clj

(get-descriptions svc concept-id)

get-extended-concept clj

(get-extended-concept svc concept-id)

get-fully-specified-name clj

(get-fully-specified-name svc concept-id)

get-installed-reference-sets clj

(get-installed-reference-sets svc)

get-parent-relationships-of-type clj

(get-parent-relationships-of-type svc concept-id type-concept-id)

Returns a collection of identifiers representing the parent relationships of the specified type of the specified concept.

get-preferred-synonym clj

(get-preferred-synonym svc concept-id langs)

get-reference-sets clj

(get-reference-sets svc component-id)

get-refset-item clj

(get-refset-item svc uuid)

get-release-information clj

(get-release-information svc)

get-status clj

(get-status root
            &
            {:keys [counts? installed-refsets?]
             :or {counts? false installed-refsets? true}})

get-synonyms clj

(get-synonyms svc concept-id)

Returns a collection of synonyms for the given concept.

historical-associations clj

(historical-associations svc component-id)

Returns all historical-type associations for the specified component. Result is a map, keyed by the type of association (e.g. SAME-AS) and a sequence of reference set items for that association. Some concepts may be ambiguous and therefore map to multiple targets. Annoyingly, but understandably, the 'moved-to' reference set does not actually reference the new component - but the namespace to which it has moved - so for example an ancient International release may have accidentally including UK specific concepts - so they will have been removed. It is hoped that most MOVED-TO concepts will also have a SAME-AS or POSSIBLY-EQUIVALENT-TO historical association. See https://confluence.ihtsdotools.org/display/DOCRELFMT/5.2.5.1+Historical+Association+Reference+Sets and https://confluence.ihtsdotools.org/display/editorialag/Component+Moved+Elsewhere

import-snomed clj

(import-snomed root dirs)

Import SNOMED distribution files from the directories dirs specified into the database directory root specified.

log-metadata clj

(log-metadata dir)

open clj

(open root)

Open a (read-only) SNOMED service from the path root.

parse-expression clj

(parse-expression svc s)

paths-to-root clj

(paths-to-root svc concept-id)

reverse-map clj

(reverse-map svc refset-id code)

reverse-map-range clj

(reverse-map-range svc refset-id prefix)

(reverse-map-range svc refset-id lower-bound upper-bound)

search clj

(search svc params)

some-indexed clj

(some-indexed pred coll)

Returns index and first logical true value of (pred x) in coll, or nil. e.g. (some-indexed #{64572001} '(385093006 233604007 205237003 363169009 363170005 123946008 64572001 404684003 138875005)) returns: [6 664572001].

source-historical clj

(source-historical svc component-id)

(source-historical svc component-id refset-ids)

Return the requested historical associations for the component of types as defined by assoc-refset-ids, or all association refsets if omitted.

source-historical-associations clj

(source-historical-associations svc component-id)

Returns all historical-type associations in which the specified component is the target. For example, searching for 24700007 will result in a map keyed by refset-id (e.g. SAME-AS reference set) and a set of concept identifiers.

subsumed-by? clj

(subsumed-by? svc concept-id subsumer-concept-id)

with-historical clj

(with-historical svc concept-ids)

(with-historical svc concept-ids assoc-refset-ids)

For a given sequence of concept identifiers, expand to include historical associations both backwards and forwards in time.

For a currently active concept, this will return historic inactivated concepts in which it is the target. For a now inactive concept, this will return the active associations and their historic associations.

By default, all types of historical associations except MoveTo and MovedFrom are included, but this is configurable.