com.eldrix.iort.impl.vocabulary

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Clojure only.

cdm-file
cdm-file-seq
csv-filename->table-name
import-cdm-fixtures
parse-row
parse-rows
stream-batched-csv

Functions to read the OMOP CDM vocabulary files.

Functions to read the OMOP CDM vocabulary files.

raw docstring

cdm-file^clj

(cdm-file {:keys [cdmModel] :as config} f)

source

cdm-file-seq^clj

(cdm-file-seq config dir)

Returns a sequence of maps containing the CDM vocabulary files in the specified directory.

Returns a sequence of maps containing the CDM vocabulary files in the
specified directory.

source raw docstring

csv-filename->table-name^clj

(csv-filename->table-name s)

source

import-cdm-fixtures^clj

(import-cdm-fixtures conn config dir)

source

parse-row^clj

(parse-row parsers row)

source

parse-rows^clj

(parse-rows parsers rows)

source

stream-batched-csv^clj

(stream-batched-csv f
                    ch
                    {:keys [metadata parsers batch-size close?]
                     :or {metadata {} batch-size 5000 close? false}})

Stream the contents of CSV file 'f' in batches to the clojure.core.async channel 'ch'. Each batch is returned with the metadata passed in supplemented with keys ':headers' and ':data'.

:headers - a vector of CSV headings
:data - a sequence of vectors representing the CSV data

Stream the contents of CSV file 'f' in batches to the 
`clojure.core.async` channel 'ch'. Each batch is returned with the metadata 
passed in supplemented with keys ':headers' and ':data'.
- :headers  - a vector of CSV headings
- :data     - a sequence of vectors representing the CSV data

source raw docstring