Liking cljdoc? Tell your friends :D

Change Log

All notable changes to this project will be documented in this file. This change log follows the conventions of keepachangelog.com.

[1.0.0-BETA17 - 2020-01-27]

updated the tech.ml.dataset version (latest 5.0 beta)
removed the Specter dependency
removed Renjin -- it will be supported in a separate library -- discussion here
ADDED vrksasna draft for session management
a very minor extension of clojisr internals to support that
removed GCReference (and tech.resource dependency) - replaced by proxy object.
added clojure.async latest dependency

[hot fix] datasets are not transfered as data.frame due to implementation of map interfaces in t.m.ds 3.01

clojisr.v1.rserve and clojisr.v1.renjin namespaces are deprecated now
setting default session type moved to clojisr.v1.r/set-default-session-type! function
refactoring of RServe process spawn and connection to mitigate (#62)
abandoned sessions/R processes cleaning fixes
tech.ml/dataset bumped to 3.01 version

Note: quote function doesn't work properly

refactored data and dataset transition between clojure and R backend as described here (#14)
tech.ml.dataset bumped to 2.13 version
removed java->naive-clj and added java->native-clj
require-r is moved to clojisr.v1.r (direct call to clojisr.v1.require/require-r is possible but deprecated)
reflection warnings mitigation
integer transition (#73)
##Inf/##-Inf transition (#72)
wrapping into () and {} (#61)
unary operator wraps next form into parentheses (#59)
missing path is created when plotting (#56)
operators wrapped into % (like %chin%) are treated as binary operators (#55)

updates in exception handling
updated tech.datatype, tech.ml.dataset dependency versions with some small code adaptation (#64)
notespace is no longer a dependency
rsymbol introduced
moved to lein-tools-deps and all deps are defined in deps.edn now

new forms added: if, do, for and while
more binary operators: %%, %/%, ** and %in%
sequences beginning with command as backticked string are now callable (eg. '("^" 2 4))
vector starting with :!code is callable
JVM shutdown hook is registered to clean all R processes which are run when closing java process bra, brabra, bra<-, brabra<- can accept nil as empty-symbol now.
data function introduced (to load data from package)
removed empty-symbol (use nil in brackets) and na (use just 'NA)
picking a random free port as the default Rserve port
updating notespace dep version
updating tech.ml.dataset dep version

bugfix for plotting (to draw a chart print should be called instead of plot)
tech.ml libraries bumped
deps updated
bugfix: recognizing S4 functions ("standardGeneric")
bugfix: handling session-args carefully on r->clj data conversion
Clojure working directory is now set on R side
print-loop bound to session (#42)
RConnection locking revisited (#40)
GC rewritten (#25)
More careful session management (all atoms are now defonce, closed? depends on processes state)
fixed rmarkdown bug (wrong usage of gc)

require-r:
- :arglists tag added for required R functions
- warning when package is not found
bugfix for problems when dynamically loading renjin jar:
- using pomegranate directly, rather than alembic (to suppoert Java newer than Java 8)
- handling classloaders carefully
a new API for data visualization, with more rendering options

bugfix of a problem with using Alembic (making sure https is used)
change in the setup API of backends: requiring the main namesapce of a backend (renjin/rserve) sets default session-type, if no other default has been set yet;

require-r can :refer :all now
REXPList, REXPNull are supported in data conversion
changed the API for setting up and switching backends ("session-types")
also fixed #27 by loading the renjin Jar on-the-fly with the proper repository into

The main changes on the user side are the fact that R functions are Clojure functions, and the initial suppoort for a Renjin backend. Details below:

performance improvement: using an R environment rather than an R list for session memory
some refactoring to allow other kinds of R backends, in particular exending the Session protocol to take care of details such as printing and package in spection
more careful id management of sessions
checking the object class on creation of R objects
being careful when printing objects of lost sessions
R objects now extend the IFn inerface, so that R functions are Clojure functions
bugfix in regreshing objects across sessions
simplified the implementation of require-r -- functions can now be handled as regular objects
handling of strange symbols/keywords: refactored a bit, added some filtering
initial support of a Renjin (pure-JVM R) backend
handling failures in require-r
changes in logging

handling unhandled cases in java->naive-clj conversion
loading data, not only functions, at require-r
require-r optimization: all underlying robjects are created once, then bound to namespaces
more careful handling of data conversion of list names: names with reader special characters are not converted to keywords

added '$ as binary operator
performance bugfix: using native double array and type hint when conferting integer R vectors with missing values to clj
recognizing reticulate python functions as functions
bugfix in overriding default session args

Initial v1 version.

Main developments since earlier versions:

code generation
changes in error handling, printing, etc.
requiring of R packages inspired by the python interop story (though less sophisticated)
function call syntax a bit different (no detailed function signatures yet)
documentation and tests using notespace

Initial draft version

Can you improve this documentation? These fine people already did:
daslu, GenerateMe, genmeblog & generatemeEdit on GitHub

cljdoc is a website building & hosting documentation for Clojure/Script libraries