varity.vcf-to-hgvs.protein — varity 0.4.1

->hgvs clj

(->hgvs {:keys [pos ref alt]} seq-rdr rg)

alt-exon-ranges clj

(alt-exon-ranges exon-ranges pos ref alt)

Returns exon ranges a variant applied.

debug-string clj

(debug-string {:keys [pos ref alt]} seq-rdr rg)

exon-sequence clj

(exon-sequence sequence* start exon-ranges)

(exon-sequence sequence* start end exon-ranges)

Extracts bases in exon from supplied sequence, returning the sequence of bases as string.

format-alt-prot-seq clj

(format-alt-prot-seq {:keys [alt-prot-seq alt-tx-prot-seq ini-offset]})