0.4.2 - 2018-11-20
- Use ex-info for varity specific exception. #20
- Fix normalization of a variant containing long ref (strand: +). #21
0.4.1 - 2018-11-04
- Add debug printing option. #19
- Fix normalization of a variant containing long ref. #17
- Support frame shift with initiation codon change. #18
0.4.0 - 2018-10-03
Strand representation is changed from string (+
, -
) to keyword (:forward
,
:reverse
).
- Support promoter on variant conversion. #10
- Profile for Clojure 1.10. #11
- Add several functions to work with refGene exon sequences. #13
- Return p.? w/ warning when CDS is indivisible by 3. #12
- Use :forward/:reverse as values for the key ':strand'. #14
- Update dependencies:
- clj-hgvs 0.2.4
- cljam 0.6.0
- commons-compress 1.18
- Fix nonsense substitution in del case. #9
- Fix the translation condition of termination substitution with frameshift. #15
- Fix conversion of no change substitution. #16
0.3.7 - 2018-04-27
- Add benchmark code for liftover. #8
- Improve the performance of liftover. #7
- Update dependencies:
- cavia 0.5.0
- commons-compress 1.16.1
- proton 0.1.6
0.3.6 - 2018-02-06
- Add function to retrieve exon regions. #4
- Update dependencies:
- commons-compress 1.16
- proton 0.1.4
- Fix mistranslation from HGVS to vcf variant. #5
0.3.5 - 2017-12-26
- Parse scores and exon-frames in refGene.txt. #3
- Update dependencies:
- cavia 0.4.3
- clj-hgvs 0.2.3
- cljam 0.5.1
- proton 0.1.3
- Fix incorrect conversion of nonsense substitution.
0.3.4 - 2017-08-21
- Update cljam (0.4.1) and proton (0.1.2) version.
- Fix errors for some uncommon variants. #2
0.3.3 - 2017-06-30
- Add tests.
- Support TwoBit format as reference sequence file.
- Fix the process of calculating alt protein sequence.
0.3.2 - 2017-06-15
- Bump clj-hgvs version up to 0.2.0.
0.3.1 - 2017-05-15
- Improve cDNA HGVS -> VCF variant support.
- ref-seq info can be used for HGVS -> VCF.
- Bump dependencies version up.
- Fix missed arguments.
- Fix arguments of lift in README.md. #1
- Fix reflection/boxing warnings.
0.3.0 - 2017-05-08
- Normalize chromosome of VCF->HGVS inputs.
- Use :chr instead of :chrom as chromosome of ref-gene.
- Use record as ref-gene index instead of map.
- Modify arguments of VCF<->HGVS.
- Modify arguments of lift.
- Bump clj-hgvs version up to 0.1.2.
First release.