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varity.chain
Functions to read, index, and search the chain format. See https://genome.ucsc.edu/goldenPath/help/chain.html for the detail chain format specifications.
Functions to read, index, and search the chain format. See https://genome.ucsc.edu/goldenPath/help/chain.html for the detail chain format specifications.
varity.codon
Handles codon.
Handles codon.
varity.hgvs-to-vcf
Functions to convert HGVS into VCF-style variants.
Functions to convert HGVS into VCF-style variants.
varity.lift
Functions to convert a genome coordinate between assemblies.
Functions to convert a genome coordinate between assemblies.
varity.ref-gene
Handles refGene.txt(.gz) content.
Handles refGene.txt(.gz) content.
varity.vcf-to-hgvs
Functions to convert a VCF-style variant into HGVS.
Functions to convert a VCF-style variant into HGVS.
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