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varity.hgvs
find-aliasescljmultimethod
(find-aliases hgvs ref-seq ref-gene)Returns alternative expressions of hgvs, including the given expression.
There can be multiple HGVS expressions for the same variant. For example,
"NM_123.4:c.4_6[1]" and "NM_123.4:c.7_9del" can be equivalent in some
cases. When you give either of the two HGVS, find-aliases returns both HGVS.
hgvs must be a coding DNA HGVS with a transcript. ref-seq must be a path
to reference or an instance which implements
cljam.io.protocols/ISequenceReader. ref-gene must be a path to
refGene.txt(.gz), a ref-gene index, or a ref-gene entity.
Returns alternative expressions of `hgvs`, including the given expression. There can be multiple HGVS expressions for the same variant. For example, "NM_123.4:c.4_6[1]" and "NM_123.4:c.7_9del" can be equivalent in some cases. When you give either of the two HGVS, `find-aliases` returns both HGVS. `hgvs` must be a coding DNA HGVS with a transcript. `ref-seq` must be a path to reference or an instance which implements `cljam.io.protocols/ISequenceReader`. `ref-gene` must be a path to refGene.txt(.gz), a ref-gene index, or a ref-gene entity.
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