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cljam.io.sam.util
Utilities related to SAM/BAM format.
Utilities related to SAM/BAM format.
compute-binclj
(compute-bin aln)Returns indexing bin based on alignment start and end.
Returns indexing bin based on alignment start and end.
get-endclj
(get-end aln)Returns the end position in reference for the given alignment.
Returns the end position in reference for the given alignment.
parse-alignmentclj
(parse-alignment line)Parse an alignment line, returning a map of the alignment.
Parse an alignment line, returning a map of the alignment.
reg->binclj
(reg->bin beg end)Calculates bin given an alignment covering [beg,end) (zero-based, half-close-half-open), the same as reg2bin on samtools.
Calculates bin given an alignment covering [beg,end) (zero-based, half-close-half-open), the same as reg2bin on samtools.
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