cljam.io.util.bgzf — cljam 0.7.2

bgzf-input-stream clj

(bgzf-input-stream x)

bgzf-output-stream clj

(bgzf-output-stream x)

BGZFIOFactory clj protocol

make-bgzf-input-stream clj

(make-bgzf-input-stream x)

make-bgzf-output-stream clj

(make-bgzf-output-stream x)

compare clj

(compare fp1 fp2)

Negative if fp1 is earlier in file than fp2, positive if it is later, 0 if equal.

get-block-address clj

(get-block-address fp)

File offset of start of BGZF block for this file pointer.

get-block-offset clj

(get-block-offset fp)

Offset into uncompressed block for this virtual file pointer.

same-or-adjacent-blocks? clj

(same-or-adjacent-blocks? fp1 fp2)

Returns true if fp2 points to somewhere in the same BGZF block, or the one immediately following fp1's BGZF block.