Merge multiple VCF files together, running in parallel over genomic regions.
Merge multiple VCF files together, running in parallel over genomic regions.
Split variation calls into small genomic regions for parallel processing.
Split variation calls into small genomic regions for parallel processing.
Performing squaring off of variant call sets, recalling at all sample positions. This converts a merged dataset with no calls at positions not assessed in the sample, into a fully 'square' merged callset with reference calls at positions without evidence for a variant, distinguishing true no-calls from reference calls.
Performing squaring off of variant call sets, recalling at all sample positions. This converts a merged dataset with no calls at positions not assessed in the sample, into a fully 'square' merged callset with reference calls at positions without evidence for a variant, distinguishing true no-calls from reference calls.
Create VCF headers using algorithms contained in Picard/Tribble tools. This does the best job of cleanly merging and organizing headers from multiple variant calling approaches.
Create VCF headers using algorithms contained in Picard/Tribble tools. This does the best job of cleanly merging and organizing headers from multiple variant calling approaches.
Utilities for manipulating VCF files
Utilities for manipulating VCF files
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