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bcbio.variation.recall.merge

Merge multiple VCF files together, running in parallel over genomic regions.

Merge multiple VCF files together, running in parallel over genomic regions.
raw docstring

-mainclj

(-main & args)
source

combine-vcfsclj

(combine-vcfs orig-vcf-files ref-file out-file config)

Merge multiple VCF files together in parallel over genomic regions.

Merge multiple VCF files together in parallel over genomic regions.
sourceraw docstring

concatenate-vcfscljmultimethod

Concatenate VCF files in supplied order, handling bgzip and plain text.

Concatenate VCF files in supplied order, handling bgzip and plain text.
sourceraw docstring

move-vcfclj

(move-vcf orig-file new-file)

Move a VCF file, also handling move of tabix index if it exists.

Move a VCF file, also handling move of tabix index if it exists.
sourceraw docstring

prep-by-regionclj

(prep-by-region f orig-vcf-files ref-file out-file config)

General functionality to split a set of VCFs into regions and apply a function, in parallel, to each.

General functionality to split a set of VCFs into regions and apply a function, in parallel, to each.
sourceraw docstring

region-mergecljmultimethod

Perform merge of multiple sample VCFs within a given region.

Perform merge of multiple sample VCFs within a given region.
sourceraw docstring

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