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cljam.io.bam-index
Parser for a BAM index file.
Parser for a BAM index file.
bam-indexclj
(bam-index f)Returns a cljam.bam-index.core.BAMIndex.
Returns a cljam.bam-index.core.BAMIndex.
bin-indexclj
(bin-index f ref-idx)Returns binning index for the given reference index.
Returns binning index for the given reference index.
get-spansclj
(get-spans bai ref-idx beg end)Returns regions of a BAM file that may contain an alignment for the given range.
Returns regions of a BAM file that may contain an alignment for the given range.
linear-indexclj
(linear-index f ref-idx)Returns linear index for the given reference index.
Returns linear index for the given reference index.
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