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cljam.io.sam.util.sequence
Utility functions for base sequences.
Utility functions for base sequences.
compressed-bases->strclj
(compressed-bases->str length compressed-bases compressed-offset)Decode a sequence from byte array to String.
Decode a sequence from byte array to String.
normalize-basesclj
(normalize-bases bases)Converts bases in given buffer to upper-case. Also converts '.' to 'N'. Bases are represented as buffer of ASCII characters.
Converts bases in given buffer to upper-case. Also converts '.' to 'N'. Bases are represented as buffer of ASCII characters.
str->compressed-basesclj
(str->compressed-bases s)Creates a buffer consists of compressed bases from ASCII sequence.
Creates a buffer consists of compressed bases from ASCII sequence.
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