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cljam.io.bam.encoder
Encoder of BAM alignment blocks.
Encoder of BAM alignment blocks.
encode-alignmentclj
(encode-alignment wrtr aln refs)Converts the alignment aln into a byte stream in the BAM file format
and writes it to the given writer wrtr.
refs is a sequence of names of reference sequences that can be acquired
using cljam.io.protocols/read-refs.
Converts the alignment `aln` into a byte stream in the BAM file format and writes it to the given writer `wrtr`. `refs` is a sequence of names of reference sequences that can be acquired using `cljam.io.protocols/read-refs`.
get-block-sizeclj
(get-block-size aln)Returns the number of bytes required to encode the given alignment.
Returns the number of bytes required to encode the given alignment.
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