cljam.io.sam.util — cljam 0.8.5

Utilities related to SAM/BAM format.

compute-bin clj

(compute-bin aln)

Returns indexing bin based on alignment start and end.

get-end clj

(get-end {:keys [pos cigar]})

Returns the end position in reference for the given alignment.

parse-alignment clj

(parse-alignment line)

Parse an alignment line, returning a map of the alignment.

stringify-alignment clj

(stringify-alignment a)

Converts an alignment data to a string representation of the SAM format.