Liking cljdoc? Tell your friends :D
Clojure only.
cljam.io.fasta.reader
create-baclj
(create-ba buffer)Copies bytes in [0, position) of the given buffer.
Copies bytes in [0, position) of the given `buffer`.
RandomAccessorcljprotocol
get-file-pointerclj
(get-file-pointer this)read-bufferclj
(read-buffer this start end)read-lineclj
(read-line this)seekclj
(seek this pos)readclj
(read rdr)Reads FASTA sequence data, returning its information as a lazy sequence.
Reads FASTA sequence data, returning its information as a lazy sequence.
read-sequenceclj
(read-sequence rdr name' start end {:keys [mask?]})Reads the specified sequence range.
start and end can each be set to nil, in which case, the first
and the last element of the sequence are specified, respectively.
rdr must be indexed.
Reads the specified sequence range. `start` and `end` can each be set to `nil`, in which case, the first and the last element of the sequence are specified, respectively. `rdr` must be indexed.
read-sequencesclj
(read-sequences rdr)Reads sequences by line, returning the line-separated sequences as lazy sequence.
Reads sequences by line, returning the line-separated sequences as lazy sequence.
resetclj
(reset rdr)Moves the file pointer of the given FASTA reader rdr to the beginning.
Moves the file pointer of the given FASTA reader `rdr` to the beginning.
sequential-read-byte-arrayclj
(sequential-read-byte-array stream page-size seq-buf-size)Returns list of maps containing sequence as byte-array. Bases ACGTN are encoded as 1-5.
Returns list of maps containing sequence as byte-array. Bases ACGTN are encoded as 1-5.
sequential-read-stringclj
(sequential-read-string stream page-size seq-buf-size {:keys [mask?]})Returns list of maps containing sequence as upper-case string.
Returns list of maps containing sequence as upper-case string.
cljdoc is a website building & hosting documentation for Clojure/Script libraries
× close