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cljam.io.cram.reader
read-alignmentsclj
(read-alignments rdr)Reads all the alignments from the CRAM file and returns them as a lazy sequence of alignment maps.
Reads all the alignments from the CRAM file and returns them as a lazy sequence of alignment maps.
read-file-definitionclj
(read-file-definition rdr)Reads the CRAM file definition.
Reads the CRAM file definition.
read-headerclj
(read-header rdr)Reads the CRAM header from the CRAM header block.
Reads the CRAM header from the CRAM header block.
skip-containerclj
(skip-container rdr)Skips the next container.
Skips the next container.
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