cljam.io.vcf.writer — cljam 0.8.5

A type of VCF writer and internal functions to write VCF contents. See https://samtools.github.io/hts-specs/ for the detail VCF specifications.

stringify-header clj

(stringify-header header)

Converts header to string.

stringify-key clj

(stringify-key k)

Converts meta-info key to string.

stringify-structured-line clj

(stringify-structured-line k m)

Converts meta info to string by k type.

write-header clj

(write-header wtr header)

Writes vcf header to the VCF file.

write-meta-info clj

(write-meta-info wtr meta-info)

Writes vcf meta-info to the VCF file.

write-variants clj

(write-variants wtr variants)

Writes variants to the VCF file.